Browse Source

ap/acedb: Added.

slackware-14.2
Damien Goutte-Gattat 13 years ago
parent
commit
e13451b0c2
  1. 120
      ap/acedb/acedb.SlackBuild
  2. 11
      ap/acedb/doinst.sh
  3. 5
      ap/acedb/sha1sums
  4. 12
      ap/acedb/slack-desc

120
ap/acedb/acedb.SlackBuild

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#!/bin/bash
# Build script for Slackware
# Damien Goutte-Gattat "gouttegd" <damien.goutte-gattat at e.ujf-grenoble.fr>
#
# Redistribution and use of this script, with or without modifications, is
# permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR IMPLIED
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# Latest acedb sourcecode is available at:
# http://www.acedb.org/Software/Downloads/
# Source package infos
VERSION=${VERSION:-4.9.39}
SOURCE=${SOURCE:-ACEDB-source.$VERSION.tar.gz}
DEMODB=${DEMODB:-ACEDB-demo.$VERSION.tar.gz}
DEVDOC=${DEVDOC:-ACEDB-doc.$VERSION.tar.gz}
HELP=${HELP:-ACEDB-help.$VERSION.tar.gz}
TOOLS=${TOOLS:-ACEDB-tools.$VERSION.tar.gz}
BASEURL=${BASEURL:-ftp://ftp.sanger.ac.uk/pub/acedb/SUPPORTED}
# Built package infos
NAMETGZ=${NAMETGZ:-acedb}
BUILD=${BUILD:-1GGD}
ARCH=${ARCH:-i486}
TARGET=${TARGET:-i486}
# Directories
TMP=${TMP:-/tmp}
OUT=${OUT:-$TMP/build}
PKG=${PKG:-$OUT/$NAMETGZ}
CWD=$(pwd)
set -e # Quit if a command returns non-zero
# Sanity checks
if [ $UID -eq 0 ]; then
echo "You should NOT run this script as ROOT!"
exit 1
fi
if [ ! -d $TMP ]; then
echo "$TMP does not exist or is not a directory!"
exit 1
fi
# Compilation flags
case "$ARCH" in
i?86)
CPUOPT="-O2 -march=$ARCH -mtune=i686"
;;
*)
CPUOPT="-O2"
;;
esac
# Get and verify the archives
# (beware when extracting them, they are tar bombs!)
for ARCHIVE in $SOURCE $DEMODB $DEVDOC $HELP $TOOLS; do
if [ ! -r $ARCHIVE ]; then
wget "$BASEURL/$ARCHIVE"
fi
done
sha1sum -c sha1sums
# Build and install the binaries
mkdir -p $TMP/$NAMETGZ
tar xf $CWD/$SOURCE -C $TMP/$NAMETGZ
cd $TMP/$NAMETGZ
ACEDB_MACHINE=LINUX_4 make -j 3 COPT="$CPUOPT" || true
mkdir -p $PKG/usr/bin
find bin.LINUX_4 -type f -perm 755 -exec install -m 755 '{}' $PKG/usr/bin \;
find $PKG/usr/bin -exec strip --strip-unneeded '{}' \;
# Install the sample database and the helper scripts
mkdir -p $PKG/usr/share/$NAMETGZ/{demo,tools}
tar xf $CWD/$DEMODB -C $PKG/usr/share/$NAMETGZ/demo
tar xf $CWD/$TOOLS -C $PKG/usr/share/$NAMETGZ/tools
# Install the docs
mkdir -p $PKG/usr/doc/$NAMETGZ-$VERSION/{developers,users}
tar xf $CWD/$DEVDOC -C $PKG/usr/doc/$NAMETGZ-$VERSION/developers
tar xf $CWD/$HELP -C $PKG/usr/doc/$NAMETGZ-$VERSION/users
# Get rid of the various CVS directories, and sanitize permissions
# for all files except the binaries
find $PKG -type d -name CVS | xargs rm -rf
find $PKG/usr/doc -type f -exec chmod 644 '{}' \;
find $PKG/usr/share -type f -exec chmod 644 '{}' \;
# Copy slack-desc file
mkdir -p $PKG/install
install -m 644 $CWD/slack-desc $PKG/install/slack-desc
# Package the tree
cd $PKG
mkdir -p $OUT
PACKAGING="
chown root:root . -R
/sbin/makepkg -l y -c n $OUT/$NAMETGZ-$VERSION-$ARCH-$BUILD.tgz
rm -rf $PKG
rm -rf $TMP/$NAMETGZ
"
if type -p fakeroot ; then
echo "$PACKAGING" | fakeroot
else
su -c "$PACKAGING"
fi

11
ap/acedb/doinst.sh

@ -0,0 +1,11 @@
#!/bin/sh
config()
{
NEW="$1"
OLD="`dirname $NEW`/`basename $NEW .new`"
if [ ! -r $OLD ]; then
mv $NEW $OLD
elif [ "`cat $OLD | md5sum`" = "`cat $NEW | md5sum`" ]; then
rm $NEW
fi
}

5
ap/acedb/sha1sums

@ -0,0 +1,5 @@
598bf67f83d3fdbb257e418be2c16570ac5c6343 ACEDB-demo.4.9.39.tar.gz
64f70fde157fb7194a1cacd733c2c12332182fb1 ACEDB-doc.4.9.39.tar.gz
8efd1d0c8e87533241fd6946019bf8982cff00a2 ACEDB-help.4.9.39.tar.gz
84bd885fa2300933fce31f6ebe38b936918f30d2 ACEDB-source.4.9.39.tar.gz
1ba2dd989efc7c846cd251c9521cd5fc87bf5205 ACEDB-tools.4.9.39.tar.gz

12
ap/acedb/slack-desc

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|-----handy-ruler------------------------------------------------------|
acedb: acedb (A C.elegans Database)
acedb:
acedb: Acedb is a genome database system. It provides a custom database
acedb: kernel, with a non-standard data model designed specifically for
acedb: handling scientific data flexibly, and a graphical user interface
acedb: with many specific displays and tools for genomic data.
acedb:
acedb: Acedb was originally developed for the C.elegans genome project, from
acedb: which its name was derived.
acedb:
acedb:
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