ap/acedb: Added.

ap/acedb/acedb.SlackBuild

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+#!/bin/bash
+# Build script for Slackware
+# Damien Goutte-Gattat "gouttegd" <damien.goutte-gattat at e.ujf-grenoble.fr>
+#
+# Redistribution and use of this script, with or without modifications, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+# Latest acedb sourcecode is available at:
+# http://www.acedb.org/Software/Downloads/
+
+# Source package infos
+VERSION=${VERSION:-4.9.39}
+SOURCE=${SOURCE:-ACEDB-source.$VERSION.tar.gz}
+DEMODB=${DEMODB:-ACEDB-demo.$VERSION.tar.gz}
+DEVDOC=${DEVDOC:-ACEDB-doc.$VERSION.tar.gz}
+HELP=${HELP:-ACEDB-help.$VERSION.tar.gz}
+TOOLS=${TOOLS:-ACEDB-tools.$VERSION.tar.gz}
+BASEURL=${BASEURL:-ftp://ftp.sanger.ac.uk/pub/acedb/SUPPORTED}
+
+# Built package infos
+NAMETGZ=${NAMETGZ:-acedb}
+BUILD=${BUILD:-1GGD}
+ARCH=${ARCH:-i486}
+TARGET=${TARGET:-i486}
+
+# Directories
+TMP=${TMP:-/tmp}
+OUT=${OUT:-$TMP/build}
+PKG=${PKG:-$OUT/$NAMETGZ}
+CWD=$(pwd)
+
+set -e  # Quit if a command returns non-zero
+
+# Sanity checks
+if [ $UID -eq 0 ]; then
+    echo "You should NOT run this script as ROOT!"
+    exit 1
+fi
+if [ ! -d $TMP ]; then
+    echo "$TMP does not exist or is not a directory!"
+    exit 1
+fi
+
+# Compilation flags
+case "$ARCH" in
+i?86)
+    CPUOPT="-O2 -march=$ARCH -mtune=i686"
+    ;;
+*)
+    CPUOPT="-O2"
+    ;;
+esac
+
+# Get and verify the archives
+# (beware when extracting them, they are tar bombs!)
+for ARCHIVE in $SOURCE $DEMODB $DEVDOC $HELP $TOOLS; do
+    if [ ! -r $ARCHIVE ]; then
+        wget "$BASEURL/$ARCHIVE"
+    fi
+done
+sha1sum -c sha1sums
+
+# Build and install the binaries
+mkdir -p $TMP/$NAMETGZ
+tar xf $CWD/$SOURCE -C $TMP/$NAMETGZ
+cd $TMP/$NAMETGZ
+ACEDB_MACHINE=LINUX_4 make -j 3 COPT="$CPUOPT" || true
+mkdir -p $PKG/usr/bin
+find bin.LINUX_4 -type f -perm 755 -exec install -m 755 '{}' $PKG/usr/bin \;
+find $PKG/usr/bin -exec strip --strip-unneeded '{}' \;
+
+# Install the sample database and the helper scripts
+mkdir -p $PKG/usr/share/$NAMETGZ/{demo,tools}
+tar xf $CWD/$DEMODB -C $PKG/usr/share/$NAMETGZ/demo
+tar xf $CWD/$TOOLS  -C $PKG/usr/share/$NAMETGZ/tools
+
+# Install the docs
+mkdir -p $PKG/usr/doc/$NAMETGZ-$VERSION/{developers,users}
+tar xf $CWD/$DEVDOC -C $PKG/usr/doc/$NAMETGZ-$VERSION/developers
+tar xf $CWD/$HELP   -C $PKG/usr/doc/$NAMETGZ-$VERSION/users
+
+# Get rid of the various CVS directories, and sanitize permissions
+# for all files except the binaries
+find $PKG -type d -name CVS | xargs rm -rf
+find $PKG/usr/doc   -type f -exec chmod 644 '{}' \;
+find $PKG/usr/share -type f -exec chmod 644 '{}' \;
+
+# Copy slack-desc file
+mkdir -p $PKG/install
+install -m 644 $CWD/slack-desc $PKG/install/slack-desc
+
+# Package the tree
+cd $PKG
+mkdir -p $OUT
+PACKAGING="
+chown root:root . -R
+/sbin/makepkg -l y -c n $OUT/$NAMETGZ-$VERSION-$ARCH-$BUILD.tgz
+rm -rf $PKG
+rm -rf $TMP/$NAMETGZ
+"
+
+if type -p fakeroot ; then
+    echo "$PACKAGING" | fakeroot
+else
+    su -c "$PACKAGING"
+fi

ap/acedb/doinst.sh

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+#!/bin/sh
+config()
+{
+    NEW="$1"
+    OLD="`dirname $NEW`/`basename $NEW .new`"
+    if [ ! -r $OLD ]; then
+        mv $NEW $OLD
+    elif [ "`cat $OLD | md5sum`" = "`cat $NEW | md5sum`" ]; then
+        rm $NEW
+    fi
+}

ap/acedb/sha1sums

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+598bf67f83d3fdbb257e418be2c16570ac5c6343  ACEDB-demo.4.9.39.tar.gz
+64f70fde157fb7194a1cacd733c2c12332182fb1  ACEDB-doc.4.9.39.tar.gz
+8efd1d0c8e87533241fd6946019bf8982cff00a2  ACEDB-help.4.9.39.tar.gz
+84bd885fa2300933fce31f6ebe38b936918f30d2  ACEDB-source.4.9.39.tar.gz
+1ba2dd989efc7c846cd251c9521cd5fc87bf5205  ACEDB-tools.4.9.39.tar.gz

ap/acedb/slack-desc

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+     |-----handy-ruler------------------------------------------------------|
+acedb: acedb (A C.elegans Database)
+acedb: 
+acedb: Acedb is a genome database system. It provides a custom database
+acedb: kernel, with a non-standard data model designed specifically for
+acedb: handling scientific data flexibly, and a graphical user interface
+acedb: with many specific displays and tools for genomic data.
+acedb: 
+acedb: Acedb was originally developed for the C.elegans genome project, from
+acedb: which its name was derived.
+acedb: 
+acedb: