Browse Source

xap/ugene: Added.

slackware-14.2
Damien Goutte-Gattat 13 years ago
parent
commit
d860439398
  1. 12
      xap/ugene/slack-desc
  2. 1
      xap/ugene/ugene-1.4.1.tar.gz.sha1
  3. 111
      xap/ugene/ugene.SlackBuild

12
xap/ugene/slack-desc

@ -0,0 +1,12 @@
|-----handy-ruler------------------------------------------------------|
ugene: ugene (integrated bioinformatics tools)
ugene:
ugene: UGENE is an open-source bioinformatics project whose goal is to
ugene: integrate popular bioinformatics tools and algorithms within a single
ugene: visual interface that can be easily used by molecular biologists.
ugene:
ugene: UGENE is released under GNU General Public License v2.
ugene:
ugene:
ugene:
ugene:

1
xap/ugene/ugene-1.4.1.tar.gz.sha1

@ -0,0 +1 @@
87646264ef8e1fa1b732faf720a485fcc90d2abb ugene-1.4.1.tar.gz

111
xap/ugene/ugene.SlackBuild

@ -0,0 +1,111 @@
#!/bin/bash
# Build script for Slackware
# Copyright (C) 2009 Damien Goutte-Gattat
#
# Redistribution and use of this script, with or without modifications,
# is permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR
# IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT,
# INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
# HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
# STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
# IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#
# Contact: Damien Goutte-Gattat <damien.goutte-gattat@e.ujf-grenoble.fr>
#
# Latest ugene sourcecode is available at: <http://ugene.unipro.ru/>.
#
# Depends: l/qt4
# Source package infos
NAMESRC=${NAMESRC:-ugene}
VERSION=${VERSION:-1.4.1}
ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION.tar.gz}
WGET=${WGET:-http://ugene.unipro.ru/downloads/$ARCHIVE}
# Built package infos
NAMETGZ=${NAMETGZ:-ugene}
BUILD=${BUILD:-1GGD}
ARCH=${ARCH:-i486}
TARGET=${TARGET:-i486}
# Directories
TMP=${TMP:-/tmp}
OUT=${OUT:-$TMP/build}
PKG=${PKG:-$OUT/$NAMETGZ}
CWD=$(pwd)
set -e # Quit if a command returns non-zero
# Sanity checks
if [ $UID -eq 0 ]; then
echo "You should NOT run this script as ROOT!"
exit 1
fi
if [ ! -d $TMP ]; then
echo "$TMP does not exist or is not a directory!"
exit 1
fi
# Compilation flags
case "$ARCH" in
i?86)
CPUOPT="-O2 -march=$ARCH -mtune=i686"
;;
*)
CPUOPT="-O2"
;;
esac
# Get and verify the source archive
if [ ! -r $ARCHIVE ]; then
wget "$WGET"
fi
sha1sum -c $ARCHIVE.sha1
NAME=$(tar ft $ARCHIVE | head -n 1 | cut -d / -f 2)
# Compile
cd $TMP
echo "Building $ARCHIVE..."
tar xf $CWD/$ARCHIVE
cd $NAME
CFLAGS=$CPUOPT \
CXXFLAGS=$CPUOPT \
qmake-qt4 -r ugene.pro INSTALL_MANDIR=/usr/man
make -j 3
make install INSTALL_ROOT=$PKG
# Strip binaries
find $PKG | xargs file | grep "ELF 32-bit LSB" | cut -d : -f 1 | \
xargs strip --strip-unneeded 2> /dev/null
# Install the documentation
mkdir -p $PKG/usr/doc/$NAME
install -m 644 COPYRIGHT LICENSE $PKG/usr/doc/$NAME
# Copy slack-desc file
install -D -m 644 $CWD/slack-desc $PKG/install/slack-desc
# Package the tree
cd $PKG
mkdir -p $OUT
PACKAGING="
chown root:root . -R
/sbin/makepkg -l y -c n $OUT/$NAMETGZ-$VERSION-$ARCH-$BUILD.tgz
rm -rf $PKG
rm -rf $TMP/$NAME
"
if type -p fakeroot ; then
echo "$PACKAGING" | fakeroot
else
su -c "$PACKAGING"
fi
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