Browse Source

l/biojava: Removed.

slackware-14.2
Damien Goutte-Gattat 9 years ago
parent
commit
d4ed0f15ef
  1. 1
      l/biojava/biojava-1.7.1-all.jar.sha1
  2. 97
      l/biojava/biojava.SlackBuild
  3. 12
      l/biojava/slack-desc

1
l/biojava/biojava-1.7.1-all.jar.sha1

@ -1 +0,0 @@
53690681bf71652d5df590f1102c3059cda50077 biojava-1.7.1-all.jar

97
l/biojava/biojava.SlackBuild

@ -1,97 +0,0 @@
#!/bin/bash
# Build script for Slackware
# Copyright (C) 2010 Damien Goutte-Gattat
#
# Redistribution and use of this script, with or without modifications,
# is permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR
# IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT,
# INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
# HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
# STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
# IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#
# Contact: Damien Goutte-Gattat <dgouttegattat@incenp.org>
#
# Latest biojava sourcecode is available at: <http://www.biojava.org/>.
# Source package infos
NAMESRC=${NAMESRC:-biojava}
VERSION=${VERSION:-1.7.1}
ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION-all.jar}
WGET=${WGET:-http://www.biojava.org/download/bj${VERSION//./}/all/$ARCHIVE}
# Build infos
NAMEPKG=${NAMEPKG:-biojava}
BUILD=${BUILD:-1GGD}
ARCH=${ARCH:-noarch}
EXT=${EXT:-txz}
# Directories
TMP=${TMP:-/tmp}
OUT=${OUT:-$TMP/build}
PKG=${PKG:-$OUT/$NAMEPKG}
CWD=$(pwd)
set -e # Quit if a command returns non-zero
# Sanity checks
if [ $UID -eq 0 ]; then
echo "You should NOT run this script as ROOT!"
exit 1
fi
if [ ! -d $TMP ]; then
echo "$TMP does not exist or is not a directory!"
exit 1
fi
# Get and verify the source archive
if [ ! -r $ARCHIVE ]; then
wget -c -O $ARCHIVE.part "$WGET"
mv $ARCHIVE.part $ARCHIVE
fi
sha1sum -c $ARCHIVE.sha1
# Extract
NAME=$NAMEPKG-$VERSION
echo "Building $ARCHIVE..."
mkdir $TMP/biojava && cd $TMP/biojava
jar xf $CWD/$ARCHIVE
cd $NAME
# Install Java libraries
mkdir -p $PKG/usr/lib/biojava
install -m 644 *.jar $PKG/usr/lib/biojava/
# Install documentations
mkdir -p $PKG/usr/doc/$NAME
install -m 644 LICENSE{,.COMMONS} README{,.biosql} $PKG/usr/doc/$NAME
cp -r demos $PKG/usr/doc/$NAME/demos
cp -r doc $PKG/usr/doc/$NAME/apidocs
# Copy slack-desc file
install -D -m 644 $CWD/slack-desc $PKG/install/slack-desc
# Package the tree
cd $PKG
mkdir -p $OUT
PACKAGING="
chown root:root . -R
/sbin/makepkg -l y -c n $OUT/$NAMEPKG-$VERSION-$ARCH-$BUILD.$EXT
rm -rf $PKG
rm -rf $TMP/biojava
"
if type -p fakeroot ; then
echo "$PACKAGING" | fakeroot
else
su -c "$PACKAGING"
fi

12
l/biojava/slack-desc

@ -1,12 +0,0 @@
|-----handy-ruler------------------------------------------------------|
biojava: biojava (open source Java framework for bioinformatics)
biojava:
biojava: BioJava is an open-source initiative with the aim of providing the
biojava: biological community with objects for representing and manipulating
biojava: biological information. We hope that it becomes the one-stop
biojava: solution for every-day biological programming.
biojava:
biojava:
biojava:
biojava:
biojava:
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