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@ -1,6 +1,6 @@ |
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#!/bin/bash |
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# Build script for Slackware |
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# Copyright (C) 2009,2010,2011,2012 Damien Goutte-Gattat |
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# Copyright (C) 2009-2012,2018 Damien Goutte-Gattat |
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# |
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# Redistribution and use of this script, with or without modifications, |
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# is permitted provided that the following conditions are met: |
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@ -23,13 +23,13 @@ |
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# Contact: Damien Goutte-Gattat <dgouttegattat@incenp.org |
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# |
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# Latest EMBOSS sourcecode is available at: |
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# <http://emboss.sourceforge.net/>. |
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# <http://emboss.open-bio.org/>. |
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# |
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# Optional: ap/postgresql |
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# Source package infos |
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NAMESRC=${NAMESRC:-EMBOSS} |
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VERSION=${VERSION:-6.5.7} |
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VERSION=${VERSION:-6.6.0} |
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ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION.tar.gz} |
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WGET=${WGET:-ftp://emboss.open-bio.org/pub/EMBOSS/$ARCHIVE} |
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@ -60,7 +60,6 @@ fi |
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# Compilation flags |
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LIBDIRSUFFIX="" |
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ENABLE64="" |
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case "$ARCH" in |
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i?86) |
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CPUOPT="-O2 -march=$ARCH -mtune=i686" |
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@ -79,14 +78,14 @@ if [ ! -r $ARCHIVE ]; then |
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wget -c -O $ARCHIVE.part "$WGET" |
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mv $ARCHIVE.part $ARCHIVE |
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fi |
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sha1sum -c $ARCHIVE.sha1 |
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sha256sum -c $ARCHIVE.sha256 |
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NAME=$(tar ft $ARCHIVE | head -n 1 | cut -d / -f 1) |
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# Get REBASE data files |
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if [ ! -r rebase.tar.gz ]; then |
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wget -O embossre.enz ftp://ftp.neb.com/pub/rebase/emboss_e.908 |
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wget -O embossre.sup ftp://ftp.neb.com/pub/rebase/emboss_s.908 |
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wget -O embossre.ref ftp://ftp.neb.com/pub/rebase/emboss_r.908 |
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wget -O embossre.enz http://rebase.neb.com/rebase/link_emboss_e |
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wget -O embossre.sup http://rebase.neb.com/rebase/link_emboss_s |
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wget -O embossre.ref http://rebase.neb.com/rebase/link_emboss_r |
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tar czf rebase.tar.gz embossre.{enz,sup,ref} |
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rm embossre.{enz,sup,ref} |
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fi |
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@ -114,8 +113,8 @@ make install-strip DESTDIR=$PKG |
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# Install the documentation |
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mkdir -p $PKG/usr/doc/$NAME |
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install -m 644 AUTHORS COMPAT COPYING ChangeLog FAQ KNOWN_BUGS LICENSE NEWS \ |
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ONEWS PROBLEMS README THANKS $PKG/usr/doc/$NAME |
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install -m 644 AUTHORS COPYING ChangeLog FAQ LICENSE NEWS \ |
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README THANKS $PKG/usr/doc/$NAME |
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# Install REBASE data |
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tar xf $CWD/rebase.tar.gz -C $PKG/usr/share/EMBOSS/data/REBASE |
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@ -123,6 +122,11 @@ tar xf $CWD/rebase.tar.gz -C $PKG/usr/share/EMBOSS/data/REBASE |
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# Copy slack-desc file |
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install -D -m 644 $CWD/slack-desc $PKG/install/slack-desc |
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# Add dependency infos |
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cat <<EOF > $PKG/install/slack-required |
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postgresql |
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EOF |
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# Package the tree |
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cd $PKG |
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mkdir -p $OUT |
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