Browse Source

ap/EMBOSS: Upgraded to EMBOSS-6.6.0.

slackware-14.2
Damien Goutte-Gattat 3 years ago
parent
commit
d1d3ace80b
  1. 1
      ap/EMBOSS/EMBOSS-6.5.7.tar.gz.sha1
  2. 1
      ap/EMBOSS/EMBOSS-6.6.0.tar.gz.sha256
  3. 24
      ap/EMBOSS/EMBOSS.SlackBuild

1
ap/EMBOSS/EMBOSS-6.5.7.tar.gz.sha1

@ -1 +0,0 @@
907231eafe07917ae0bf9c5da2e7cdc3e9bae03a EMBOSS-6.5.7.tar.gz

1
ap/EMBOSS/EMBOSS-6.6.0.tar.gz.sha256

@ -0,0 +1 @@
7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e EMBOSS-6.6.0.tar.gz

24
ap/EMBOSS/EMBOSS.SlackBuild

@ -1,6 +1,6 @@
#!/bin/bash
# Build script for Slackware
# Copyright (C) 2009,2010,2011,2012 Damien Goutte-Gattat
# Copyright (C) 2009-2012,2018 Damien Goutte-Gattat
#
# Redistribution and use of this script, with or without modifications,
# is permitted provided that the following conditions are met:
@ -23,13 +23,13 @@
# Contact: Damien Goutte-Gattat <dgouttegattat@incenp.org
#
# Latest EMBOSS sourcecode is available at:
# <http://emboss.sourceforge.net/>.
# <http://emboss.open-bio.org/>.
#
# Optional: ap/postgresql
# Source package infos
NAMESRC=${NAMESRC:-EMBOSS}
VERSION=${VERSION:-6.5.7}
VERSION=${VERSION:-6.6.0}
ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION.tar.gz}
WGET=${WGET:-ftp://emboss.open-bio.org/pub/EMBOSS/$ARCHIVE}
@ -60,7 +60,6 @@ fi
# Compilation flags
LIBDIRSUFFIX=""
ENABLE64=""
case "$ARCH" in
i?86)
CPUOPT="-O2 -march=$ARCH -mtune=i686"
@ -79,14 +78,14 @@ if [ ! -r $ARCHIVE ]; then
wget -c -O $ARCHIVE.part "$WGET"
mv $ARCHIVE.part $ARCHIVE
fi
sha1sum -c $ARCHIVE.sha1
sha256sum -c $ARCHIVE.sha256
NAME=$(tar ft $ARCHIVE | head -n 1 | cut -d / -f 1)
# Get REBASE data files
if [ ! -r rebase.tar.gz ]; then
wget -O embossre.enz ftp://ftp.neb.com/pub/rebase/emboss_e.908
wget -O embossre.sup ftp://ftp.neb.com/pub/rebase/emboss_s.908
wget -O embossre.ref ftp://ftp.neb.com/pub/rebase/emboss_r.908
wget -O embossre.enz http://rebase.neb.com/rebase/link_emboss_e
wget -O embossre.sup http://rebase.neb.com/rebase/link_emboss_s
wget -O embossre.ref http://rebase.neb.com/rebase/link_emboss_r
tar czf rebase.tar.gz embossre.{enz,sup,ref}
rm embossre.{enz,sup,ref}
fi
@ -114,8 +113,8 @@ make install-strip DESTDIR=$PKG
# Install the documentation
mkdir -p $PKG/usr/doc/$NAME
install -m 644 AUTHORS COMPAT COPYING ChangeLog FAQ KNOWN_BUGS LICENSE NEWS \
ONEWS PROBLEMS README THANKS $PKG/usr/doc/$NAME
install -m 644 AUTHORS COPYING ChangeLog FAQ LICENSE NEWS \
README THANKS $PKG/usr/doc/$NAME
# Install REBASE data
tar xf $CWD/rebase.tar.gz -C $PKG/usr/share/EMBOSS/data/REBASE
@ -123,6 +122,11 @@ tar xf $CWD/rebase.tar.gz -C $PKG/usr/share/EMBOSS/data/REBASE
# Copy slack-desc file
install -D -m 644 $CWD/slack-desc $PKG/install/slack-desc
# Add dependency infos
cat <<EOF > $PKG/install/slack-required
postgresql
EOF
# Package the tree
cd $PKG
mkdir -p $OUT

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