From 9121b1b3daeceb514806e0f084905067dcb3b516 Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dgouttegattat@incenp.org>
Date: Sun, 19 Mar 2017 11:51:56 +0100
Subject: [PATCH] ap/ncbi-blast:  Upgraded to ncbi-blast-2.6.0.

---
 ap/ncbi-blast/ncbi-blast-2.4.0+-src.tar.gz.sha1  |  1 -
 .../ncbi-blast-2.6.0+-src.tar.gz.sha256          |  1 +
 ap/ncbi-blast/ncbi-blast.SlackBuild              | 16 ++++++----------
 3 files changed, 7 insertions(+), 11 deletions(-)
 delete mode 100644 ap/ncbi-blast/ncbi-blast-2.4.0+-src.tar.gz.sha1
 create mode 100644 ap/ncbi-blast/ncbi-blast-2.6.0+-src.tar.gz.sha256

diff --git a/ap/ncbi-blast/ncbi-blast-2.4.0+-src.tar.gz.sha1 b/ap/ncbi-blast/ncbi-blast-2.4.0+-src.tar.gz.sha1
deleted file mode 100644
index 52a78239..00000000
--- a/ap/ncbi-blast/ncbi-blast-2.4.0+-src.tar.gz.sha1
+++ /dev/null
@@ -1 +0,0 @@
-2e6f4c76225cb0efa48b573d1520e1a472e17574  ncbi-blast-2.4.0+-src.tar.gz
diff --git a/ap/ncbi-blast/ncbi-blast-2.6.0+-src.tar.gz.sha256 b/ap/ncbi-blast/ncbi-blast-2.6.0+-src.tar.gz.sha256
new file mode 100644
index 00000000..e5618c7f
--- /dev/null
+++ b/ap/ncbi-blast/ncbi-blast-2.6.0+-src.tar.gz.sha256
@@ -0,0 +1 @@
+0510e1d607d0fb4389eca50d434d5a0be787423b6850b3a4f315abc2ef19c996  ncbi-blast-2.6.0+-src.tar.gz
diff --git a/ap/ncbi-blast/ncbi-blast.SlackBuild b/ap/ncbi-blast/ncbi-blast.SlackBuild
index 5afa6c57..50d997d1 100755
--- a/ap/ncbi-blast/ncbi-blast.SlackBuild
+++ b/ap/ncbi-blast/ncbi-blast.SlackBuild
@@ -1,6 +1,6 @@
 #!/bin/bash
 # Build script for Slackware
-# Copyright (C) 2013,2015 Damien Goutte-Gattat
+# Copyright (C) 2013,2015,2017 Damien Goutte-Gattat
 #
 # Redistribution and use of this script, with or without modifications,
 # is permitted provided that the following conditions are met:
@@ -27,7 +27,7 @@
 
 # Source package infos
 NAMESRC=${NAMESRC:-ncbi-blast}
-VERSION=${VERSION:-2.4.0}
+VERSION=${VERSION:-2.6.0}
 ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION+-src.tar.gz}
 WGET=${WGET:-http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$VERSION/$ARCHIVE}
 
@@ -78,7 +78,7 @@ if [ ! -r $ARCHIVE ]; then
     wget -c -O $ARCHIVE.part "$WGET"
     mv $ARCHIVE.part $ARCHIVE
 fi
-sha1sum -c $ARCHIVE.sha1
+sha256sum -c $ARCHIVE.sha256
 NAME=$(tar ft $ARCHIVE | head -n 1 | cut -d / -f 1)
 
 # Compile
@@ -91,16 +91,12 @@ CXXFLAGS=$CPUOPT \
 ./configure \
   --prefix=/usr \
   --libdir=/usr/lib$LIBDIRSUFFIX $OPT64 \
-  --without-debug \
   --with-dll \
   --with-bin-release \
-  --with-mt \
-  --with-openmp \
-  --with-strip \
-  --without-vdb \
-  --without-boost
+  --without-boost \
+  --build=$ARCH-slackware-linux
 make -j $JOBS
-make install prefix=$PKG/usr libdir=$PKG/usr/lib$LIBDIRSUFFIX
+make install prefix=$PKG/usr libdir=$PKG/usr/lib$LIBDIRSUFFIX || /bin/true
 
 # Strip shared libraries
 strip --strip-unneeded $PKG/usr/lib$LIBDIRSUFFIX/*.so