Browse Source

ap/dssp: Removed.

current-20191101
Damien Goutte-Gattat 2 years ago
parent
commit
6ef93b9d94
  1. 1
      ap/dssp/dssp-2.2.1.tgz.sha1
  2. 113
      ap/dssp/dssp.SlackBuild
  3. 12
      ap/dssp/slack-desc

1
ap/dssp/dssp-2.2.1.tgz.sha1

@ -1 +0,0 @@
b0fe1b2a4c5c04efaac9f89442fa6f2947ff75b7 dssp-2.2.1.tgz

113
ap/dssp/dssp.SlackBuild

@ -1,113 +0,0 @@
#!/bin/bash
# Build script for Slackware
# Copyright 2008,2009,2013 Damien Goutte-Gattat
#
# Redistribution and use of this script, with or without modifications,
# is permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR
# IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT,
# INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
# HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
# STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
# IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#
# Contact: Damien Goutte-Gattat <dgouttegattat@incenp.org>
#
# Latest dsspcmbi sourcecode is available at:
# <http://swift.cmbi.ru.nl/gv/dssp/>.
# Source package infos
NAMESRC=${NAMESRC:-dssp}
VERSION=${VERSION:-2.2.1}
ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION.tgz}
WGET=${WGET:-ftp://ftp.cmbi.ru.nl/pub/software/dssp/$ARCHIVE}
# Build infos
NAMEPKG=${NAMEPKG:-dssp}
BUILD=${BUILD:-1GGD}
ARCH=${ARCH:-$(uname -m | sed 's/^i.86$/i486/;s/^arm.*/arm/')}
JOBS=${JOBS:-1}
EXT=${EXT:-txz}
# Directories
TMP=${TMP:-/tmp}
OUT=${OUT:-$TMP/build}
PKG=${PKG:-$OUT/$NAMEPKG}
CWD=$(pwd)
set -e
# Sanity check
if [ $UID -eq 0 ]; then
echo "You should NOT run this script as ROOT!"
exit 1
fi
if [ ! -d $TMP ]; then
echo "$TMP does not exist or is not a directory!"
exit 1
fi
# Compilation flags
case "$ARCH" in
i?86)
CPUOPT="-O2 -march=$ARCH -mtune=i686"
;;
x86_64)
CPUOPT="-O2 -fPIC"
;;
*)
CPUOPT="-O2"
;;
esac
# Get and verify the source archive
if [ ! -r $ARCHIVE ]; then
wget -c -O $ARCHIVE.part "$WGET"
mv $ARCHIVE.part $ARCHIVE
fi
sha1sum -c $ARCHIVE.sha1
NAME=$(tar ft $ARCHIVE | head -n 1 | cut -d / -f 1)
# Compile
cd $TMP
echo "Building $ARCHIVE..."
tar xf $CWD/$ARCHIVE
cd $NAME
echo "BOOST_LIB_SUFFIX =" > make.config
sed -i 's/-static//' makefile
make -j $JOBS
# Install
mkdir -p $PKG/usr/bin $PKG/usr/man/man1 $PKG/usr/doc/$NAME
install -s -m 755 mkdssp $PKG/usr/bin/mkdssp
install -m 644 doc/mkdssp.1 $PKG/usr/man/man1/mkdssp.1
gzip -9 $PKG/usr/man/man1/mkdssp.1
install -m 644 LICENSE_1_0.txt README.txt changelog \
$PKG/usr/doc/$NAMESRC-$VERSION
# Copy slack-desc file
install -D -m 755 $CWD/slack-desc $PKG/install/slack-desc
# Package the tree
cd $PKG
mkdir -p $OUT
PACKAGING="
chown root:root . -R
/sbin/makepkg -l y -c n $OUT/$NAMEPKG-$VERSION-$ARCH-$BUILD.$EXT
rm -rf $PKG
rm -rf $TMP/$NAME
"
if type -p fakeroot ; then
echo "$PACKAGING" | fakeroot
else
su -c "$PACKAGING"
fi

12
ap/dssp/slack-desc

@ -1,12 +0,0 @@
|-----handy-ruler------------------------------------------------------|
dssp: dssp (protein structure prediction program)
dssp:
dssp: DSSP defines secondary structure and solvent exposure of proteins
dssp: from atomic coordinates as given in Protein Data Bank format.
dssp:
dssp: W. Kabsch and C. Sander (1983), BioPolymers 22:2577-2637
dssp:
dssp:
dssp:
dssp:
dssp:
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