ap/EMBOSS: Upgraded to EMBOSS-6.5.7.

ap/EMBOSS/EMBOSS-6.4.0.tar.gz.sha1

@@ -1 +0,0 @@
-cc5286ffc55ae1af1a5c48b26ff337f4a2f94834  EMBOSS-6.4.0.tar.gz

ap/EMBOSS/EMBOSS-6.5.7-no-embossupdate.diff

@@ -0,0 +1,23 @@
+diff -Naur EMBOSS-6.5.7.orig/Makefile.am EMBOSS-6.5.7/Makefile.am
+--- EMBOSS-6.5.7.orig/Makefile.am	2012-07-22 13:16:46.000000000 +0200
++++ EMBOSS-6.5.7/Makefile.am	2012-09-22 17:53:10.139185320 +0200
+@@ -32,6 +32,3 @@
+ ###	tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf )
+ 	tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; )
+ 	tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf )
+-
+-install-exec-hook:
+-	$(bindir)/embossupdate
+diff -Naur EMBOSS-6.5.7.orig/Makefile.in EMBOSS-6.5.7/Makefile.in
+--- EMBOSS-6.5.7.orig/Makefile.in	2012-07-24 16:11:48.000000000 +0200
++++ EMBOSS-6.5.7/Makefile.in	2012-09-22 17:53:17.575133039 +0200
+@@ -790,9 +790,6 @@
+ 	tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; )
+ 	tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf )
+ 
+-install-exec-hook:
+-	$(bindir)/embossupdate
+-
+ # Tell versions [3.59,3.63) of GNU make to not export all variables.
+ # Otherwise a system limit (for SysV at least) may be exceeded.
+ .NOEXPORT:

ap/EMBOSS/EMBOSS-6.5.7.tar.gz.sha1

@@ -0,0 +1 @@
+907231eafe07917ae0bf9c5da2e7cdc3e9bae03a  EMBOSS-6.5.7.tar.gz

ap/EMBOSS/EMBOSS.SlackBuild

@@ -1,6 +1,6 @@
 #!/bin/bash
 # Build script for Slackware
-# Copyright (C) 2009,2010,2011 Damien Goutte-Gattat
+# Copyright (C) 2009,2010,2011,2012 Damien Goutte-Gattat
 #
 # Redistribution and use of this script, with or without modifications,
 # is permitted provided that the following conditions are met:
@@ -29,7 +29,7 @@
 
 # Source package infos
 NAMESRC=${NAMESRC:-EMBOSS}
-VERSION=${VERSION:-6.4.0}
+VERSION=${VERSION:-6.5.7}
 ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION.tar.gz}
 WGET=${WGET:-ftp://emboss.open-bio.org/pub/EMBOSS/$ARCHIVE}
 
@@ -69,7 +69,6 @@ i?86)
 x86_64)
     CPUOPT="-O2 -fPIC"
     LIBDIRSUFFIX="64"
-    ENABLE64="--enable-64"
     ;;
 *)
     CPUOPT="-O2"
@@ -98,13 +97,14 @@ cd $TMP
 echo "Building $ARCHIVE..."
 tar xf $CWD/$ARCHIVE
 cd $NAME
+# Disable pointless execution of embossupdate during make install
+patch -p 1 < $CWD/EMBOSS-6.5.7-no-embossupdate.diff
 CFLAGS=$CPUOPT \
 CXXFLAGS=$CPUOPT \
 ./configure \
   --prefix=/usr \
   --libdir=/usr/lib$LIBDIRSUFFIX \
   --includedir=/usr/include/EMBOSS \
-  $ENABLE64 \
   --disable-dependency-tracking \
   --disable-static \
   --enable-systemlibs \