|
|
|
@ -1,6 +1,6 @@ |
|
|
|
#!/bin/bash |
|
|
|
# Build script for Slackware |
|
|
|
# Copyright (C) 2008,2009,2010,2013,2016 Damien Goutte-Gattat |
|
|
|
# Copyright (C) 2008,2009,2010,2013,2016,2019 Damien Goutte-Gattat |
|
|
|
# |
|
|
|
# Redistribution and use of this script, with or without modifications, |
|
|
|
# is permitted provided that the following conditions are met: |
|
|
|
@ -27,7 +27,7 @@ |
|
|
|
|
|
|
|
# Source package infos |
|
|
|
NAMESRC=${NAMESRC:-primer3} |
|
|
|
VERSION=${VERSION:-2.3.7} |
|
|
|
VERSION=${VERSION:-2.4.0} |
|
|
|
ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION.tar.gz} |
|
|
|
WGET=${WGET:-http://downloads.sourceforge.net/project/primer3/primer3/$VERSION/$ARCHIVE} |
|
|
|
|
|
|
|
@ -74,24 +74,23 @@ if [ ! -r $ARCHIVE ]; then |
|
|
|
wget -c -O $ARCHIVE.part "$WGET" |
|
|
|
mv $ARCHIVE.part $ARCHIVE |
|
|
|
fi |
|
|
|
sha1sum -c $ARCHIVE.sha1 |
|
|
|
sha256sum -c $ARCHIVE.sha256 |
|
|
|
|
|
|
|
# Compile |
|
|
|
cd $TMP |
|
|
|
echo "Building $ARCHIVE..." |
|
|
|
tar xf $CWD/$ARCHIVE |
|
|
|
cd $NAMEPKG-$VERSION |
|
|
|
make -j $JOBS -C src O_OPTS="$CPUOPT" |
|
|
|
make -j $JOBS -C src O_OPTS="$CPUOPT -fpermissive" |
|
|
|
|
|
|
|
# Install |
|
|
|
mkdir -p $PKG/usr/bin |
|
|
|
install -s -m 755 src/{primer3_core,oligotm,ntdpal,ntthal,long_seq_tm_test} \ |
|
|
|
install -s -m 755 src/{ntdpal,ntthal,oligotm,primer3_core,primer3_masker} \ |
|
|
|
$PKG/usr/bin |
|
|
|
|
|
|
|
# Install the documentation |
|
|
|
mkdir -p $PKG/usr/doc/$NAMEPKG-$VERSION |
|
|
|
install -m 644 COPYING.txt example primer3_manual.htm src/release_notes.txt \ |
|
|
|
*_default_settings.txt $PKG/usr/doc/$NAMEPKG-$VERSION |
|
|
|
install -m 644 LICENSE example $PKG/usr/doc/$NAMEPKG-$VERSION |
|
|
|
|
|
|
|
# Copy slack-desc file |
|
|
|
install -D -m 644 $CWD/slack-desc $PKG/install/slack-desc |
|
|
|
|
