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ap/primer3: Cleaned up for Slackware-13.0.

slackware-14.2
Damien Goutte-Gattat 12 years ago
parent
commit
402eb5277a
  1. 60
      ap/primer3/primer3.SlackBuild

60
ap/primer3/primer3.SlackBuild

@ -1,26 +1,29 @@
#!/bin/bash
# Build script for Slackware
# Damien Goutte-Gattat "gouttegd" < dgouttegattat at incenp.org >
# Copyright (C) 2008,2009 Damien Goutte-Gattat
#
# Redistribution and use of this script, with or without modifications, is
# permitted provided that the following conditions are met:
# Redistribution and use of this script, with or without modifications,
# is permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR IMPLIED
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
# IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT,
# INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
# HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
# STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
# IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#
# Contact: Damien Goutte-Gattat <dgouttegattat@incenp.org>
#
# Latest primer3 sourcecode is available at:
# http://primer3.sourceforge.net/
# <http://primer3.sourceforge.net/>.
# Source package infos
NAMESRC=${NAMESRC:-primer3}
@ -29,15 +32,16 @@ ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION.tar.gz}
WGET=${WGET:-http://switch.dl.sourceforge.net/sourceforge/primer3/$ARCHIVE}
# Built package infos
NAMETGZ=${NAMETGZ:-primer3}
NAMEPKG=${NAMEPKG:-primer3}
BUILD=${BUILD:-1GGD}
ARCH=${ARCH:-i486}
TARGET=${TARGET:-i486}
JOBS=${JOBS:-1}
EXT=${EXT:-txz}
# Directories
TMP=${TMP:-/tmp}
OUT=${OUT:-$TMP/build}
PKG=${PKG:-$OUT/$NAMETGZ}
PKG=${PKG:-$OUT/$NAMEPKG}
CWD=$(pwd)
set -e # Quit if a command returns non-zero
@ -57,6 +61,9 @@ case "$ARCH" in
i?86)
CPUOPT="-O2 -march=$ARCH -mtune=i686"
;;
x86_64)
CPUOPT="-O2 -fPIC"
;;
*)
CPUOPT="-O2"
;;
@ -64,16 +71,17 @@ esac
# Get and verify the source archive
if [ ! -r $ARCHIVE ]; then
wget "$WGET"
wget -c -O $ARCHIVE.part "$WGET"
mv $ARCHIVE.part $ARCHIVE
fi
sha1sum -c $ARCHIVE.sha1
# Compile
cd $TMP
echo "Building $ARCHIVE..."
mkdir $NAMETGZ-$VERSION && tar xf $CWD/$ARCHIVE -C $NAMETGZ-$VERSION
cd $NAMETGZ-$VERSION
make -j 2 -C src O_OPTS="$CPUOPT"
mkdir $NAMEPKG-$VERSION && tar xf $CWD/$ARCHIVE -C $NAMEPKG-$VERSION
cd $NAMEPKG-$VERSION
make -j $JOBS -C src O_OPTS="$CPUOPT"
# Install
mkdir -p $PKG/usr/bin
@ -81,10 +89,10 @@ install -s -m 755 src/primer3_core $PKG/usr/bin/primer3
install -s -m 755 src/{oligotm,ntdpal,long_seq_tm_test} $PKG/usr/bin
# Install the documentation
mkdir -p $PKG/usr/doc/$NAMETGZ-$VERSION
mkdir -p $PKG/usr/doc/$NAMEPKG-$VERSION
install -m 644 \
COPYING.txt README.txt how-to-cite.txt example src/release_notes.txt \
$PKG/usr/doc/$NAMETGZ-$VERSION
$PKG/usr/doc/$NAMEPKG-$VERSION
# Copy slack-desc file
install -D -m 644 $CWD/slack-desc $PKG/install/slack-desc
@ -94,9 +102,9 @@ cd $PKG
mkdir -p $OUT
PACKAGING="
chown root:root . -R
/sbin/makepkg -l y -c n $OUT/$NAMETGZ-$VERSION-$ARCH-$BUILD.tgz
/sbin/makepkg -l y -c n $OUT/$NAMEPKG-$VERSION-$ARCH-$BUILD.$EXT
rm -rf $PKG
rm -rf $TMP/$NAMETGZ-$VERSION
rm -rf $TMP/$NAMEPKG-$VERSION
"
if type -p fakeroot ; then
echo "$PACKAGING" | fakeroot

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