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ap/EMBOSS: Upgraded to EMBOSS-6.3.1.

slackware-14.2
Damien Goutte-Gattat 12 years ago
parent
commit
2dc5cdbeea
  1. 1
      ap/EMBOSS/EMBOSS-6.3.1.tar.gz.sha1
  2. 16
      ap/EMBOSS/EMBOSS.SlackBuild

1
ap/EMBOSS/EMBOSS-6.3.1.tar.gz.sha1

@ -0,0 +1 @@
efb2e9c1c9b038432ce6bd81ee4692d5f1dc2f72 EMBOSS-6.3.1.tar.gz

16
ap/EMBOSS/EMBOSS.SlackBuild

@ -29,13 +29,13 @@
# Source package infos
NAMESRC=${NAMESRC:-EMBOSS}
VERSION=${VERSION:-6.2.0}
VERSION=${VERSION:-6.3.1}
ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION.tar.gz}
WGET=${WGET:-ftp://emboss.open-bio.org/pub/EMBOSS/$ARCHIVE}
# Build infos
NAMEPKG=${NAMEPKG:-EMBOSS}
BUILD=${BUILD:-2GGD}
BUILD=${BUILD:-1GGD}
ARCH=${ARCH:-$(uname -m | sed 's/^i?86$/i486/;s/^arm.*/arm/')}
EXT=${EXT:-txz}
JOBS=${JOBS:-1}
@ -94,11 +94,6 @@ if [ ! -r rebase.tar.gz ]; then
fi
# Compile
# EMBOSS insists on using its own copies of some available libraries
# such as zlib, expat and pcre. I do not want to start patching the
# build system heavily (as Debian or Fedora seem to do), so at least
# I need to prevent replacing the system headers, hence the
# --includedir=/usr/include/EMBOSS to isolate EMBOSS headers.
cd $TMP
echo "Building $ARCHIVE..."
tar xf $CWD/$ARCHIVE
@ -112,6 +107,7 @@ CXXFLAGS=$CPUOPT \
$ENABLE64 \
--disable-dependency-tracking \
--disable-static \
--enable-systemlibs \
--with-java=/usr/lib$LIBDIRSUFFIX/jdk$JDKVERSION/include \
--with-javaos=/usr/lib$LIBDIRSUFFIX/jdk$JDKVERSION/include/linux
make -j $JOBS
@ -119,10 +115,8 @@ make install-strip DESTDIR=$PKG
# Install the documentation
mkdir -p $PKG/usr/doc/$NAME
install -m 644 \
AUTHORS COMPAT COPYING ChangeLog FAQ KNOWN_BUGS LICENSE NEWS ONEWS \
PROBLEMS README THANKS \
$PKG/usr/doc/$NAME
install -m 644 AUTHORS COMPAT COPYING ChangeLog FAQ KNOWN_BUGS LICENSE NEWS \
ONEWS PROBLEMS README THANKS $PKG/usr/doc/$NAME
# Install REBASE data
tar xf $CWD/rebase.tar.gz -C $PKG/usr/share/EMBOSS/data/REBASE

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