Browse Source

ap/dsspcmbi: Added.

slackware-14.2
Damien Goutte-Gattat 13 years ago
parent
commit
26ddb27fcb
  1. 109
      ap/dsspcmbi/dsspcmbi.SlackBuild
  2. 1
      ap/dsspcmbi/dsspcmbi.zip.sha1
  3. 12
      ap/dsspcmbi/slack-desc

109
ap/dsspcmbi/dsspcmbi.SlackBuild

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#!/bin/bash
# Build script for Slackware
# Damien Goutte-Gattat "gouttegd" <damien.goutte-gattat at e.ujf-grenoble.fr>
#
# Redistribution and use of this script, with or without modifications, is
# permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR IMPLIED
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# Latest dsspcmbi sourcecode is available at:
# http://swift.cmbi.ru.nl/gv/dssp/
# Source package infos
NAMESRC=${NAMESRC:-dsspcmbi}
VERSION=${VERSION:-20000401}
ARCHIVE=${ARCHIVE:-$NAMESRC.zip}
WGET=${WGET:-ftp://ftp.cmbi.ru.nl/pub/molbio/software/$ARCHIVE}
# Built package infos
NAMETGZ=${NAMETGZ:-dsspcmbi}
BUILD=${BUILD:-1GGD}
ARCH=${ARCH:-i486}
TARGET=${TARGET:-i486}
# Directories
TMP=${TMP:-/tmp}
OUT=${OUT:-$TMP/build}
PKG=${PKG:-$OUT/$NAMETGZ}
CWD=$(pwd)
set -e # Quit if a command returns non-zero
# Sanity check
if [ $UID -eq 0 ]; then
echo "You should NOT run this script as ROOT!"
exit 1
fi
if [ ! -d $TMP ]; then
echo "$TMP does not exist or is not a directory!"
exit 1
fi
# Compilation flags
case "$ARCH" in
i?86)
CPUOPT="-O2 -march=$ARCH -mtune=i686"
;;
*)
CPUOPT="-O2"
;;
esac
# Get and verify the source archive
if [ ! -r $ARCHIVE ]; then
wget "$WGET"
fi
sha1sum -c $ARCHIVE.sha1
NAME=dssp
# Compile
cd $TMP
echo "Building $ARCHIVE..."
unzip $CWD/$ARCHIVE
cd $NAME
rm dsspcmbi
gcc -c $CPUOPT -Wall -DGCC \
AccSurf.c CalcAccSurf.c Contacts.c Date.c DsspCMBI.c Vector.c p2clib.c
gcc -o dsspcmbi -s *.o -lm
# Install
mkdir -p $PKG/usr/bin
install -m 755 dsspcmbi $PKG/usr/bin
ln -sv /usr/bin/dsspcmbi $PKG/usr/bin/dssp
# Install the documentation
mkdir -p $PKG/usr/doc/$NAMESRC-$VERSION
install -m 644 \
COPYRIGHT README.TXT index.html \
$PKG/usr/doc/$NAMESRC-$VERSION
# Copy slack-desc file
install -D -m 755 $CWD/slack-desc $PKG/install/slack-desc
# Package the tree
cd $PKG
mkdir -p $OUT
PACKAGING="
chown root:root . -R
/sbin/makepkg -l y -c n $OUT/$NAMETGZ-$VERSION-$ARCH-$BUILD.tgz
rm -rf $PKG
rm -rf $TMP/$NAME
"
if type -p fakeroot ; then
echo "$PACKAGING" | fakeroot
else
su -c "$PACKAGING"
fi

1
ap/dsspcmbi/dsspcmbi.zip.sha1

@ -0,0 +1 @@
de348eea9be2d67ec33f9dc6346fd966e4bb538a dsspcmbi.zip

12
ap/dsspcmbi/slack-desc

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|-----handy-ruler------------------------------------------------------|
dsspcmbi: dsspcmbi (protein structure prediction program)
dsspcmbi:
dsspcmbi: DSSP defines secondary structure and solvent exposure of proteins
dsspcmbi: from atomic coordinates as given in Protein Data Bank format.
dsspcmbi:
dsspcmbi: W. Kabsch and C. Sander (1983), BioPolymers 22:2577-2637
dsspcmbi:
dsspcmbi: This is the version of the Centre for Molecular and Biomolecular
dsspcmbi: Informatics (CMBI) of Netherlands. Restrictions: commercial users
dsspcmbi: must apply for a licence; not to be used for classified research.
dsspcmbi:
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