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|
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#!/bin/bash |
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# Build script for Slackware |
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# Damien Goutte-Gattat "gouttegd" <damien.goutte-gattat at e.ujf-grenoble.fr> |
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# |
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# Redistribution and use of this script, with or without modifications, is |
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# permitted provided that the following conditions are met: |
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# |
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# 1. Redistributions of this script must retain the above copyright |
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# notice, this list of conditions and the following disclaimer. |
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# |
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR IMPLIED |
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF |
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO |
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, |
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, |
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; |
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, |
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR |
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF |
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
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# |
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# Latest dsspcmbi sourcecode is available at: |
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# http://swift.cmbi.ru.nl/gv/dssp/ |
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|
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# Source package infos |
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NAMESRC=${NAMESRC:-dsspcmbi} |
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VERSION=${VERSION:-20000401} |
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ARCHIVE=${ARCHIVE:-$NAMESRC.zip} |
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WGET=${WGET:-ftp://ftp.cmbi.ru.nl/pub/molbio/software/$ARCHIVE} |
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|
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# Built package infos |
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NAMETGZ=${NAMETGZ:-dsspcmbi} |
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BUILD=${BUILD:-1GGD} |
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ARCH=${ARCH:-i486} |
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TARGET=${TARGET:-i486} |
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|
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# Directories |
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TMP=${TMP:-/tmp} |
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OUT=${OUT:-$TMP/build} |
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PKG=${PKG:-$OUT/$NAMETGZ} |
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CWD=$(pwd) |
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|
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set -e # Quit if a command returns non-zero |
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|
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# Sanity check |
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if [ $UID -eq 0 ]; then |
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echo "You should NOT run this script as ROOT!" |
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exit 1 |
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fi |
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if [ ! -d $TMP ]; then |
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echo "$TMP does not exist or is not a directory!" |
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exit 1 |
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fi |
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|
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# Compilation flags |
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case "$ARCH" in |
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i?86) |
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CPUOPT="-O2 -march=$ARCH -mtune=i686" |
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;; |
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*) |
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CPUOPT="-O2" |
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;; |
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esac |
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|
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# Get and verify the source archive |
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if [ ! -r $ARCHIVE ]; then |
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wget "$WGET" |
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fi |
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sha1sum -c $ARCHIVE.sha1 |
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NAME=dssp |
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|
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# Compile |
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cd $TMP |
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echo "Building $ARCHIVE..." |
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unzip $CWD/$ARCHIVE |
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cd $NAME |
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rm dsspcmbi |
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gcc -c $CPUOPT -Wall -DGCC \ |
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AccSurf.c CalcAccSurf.c Contacts.c Date.c DsspCMBI.c Vector.c p2clib.c |
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gcc -o dsspcmbi -s *.o -lm |
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|
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# Install |
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mkdir -p $PKG/usr/bin |
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install -m 755 dsspcmbi $PKG/usr/bin |
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ln -sv /usr/bin/dsspcmbi $PKG/usr/bin/dssp |
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|
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# Install the documentation |
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mkdir -p $PKG/usr/doc/$NAMESRC-$VERSION |
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install -m 644 \ |
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COPYRIGHT README.TXT index.html \ |
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$PKG/usr/doc/$NAMESRC-$VERSION |
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|
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# Copy slack-desc file |
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install -D -m 755 $CWD/slack-desc $PKG/install/slack-desc |
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|
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# Package the tree |
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cd $PKG |
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mkdir -p $OUT |
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PACKAGING=" |
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chown root:root . -R |
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/sbin/makepkg -l y -c n $OUT/$NAMETGZ-$VERSION-$ARCH-$BUILD.tgz |
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rm -rf $PKG |
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rm -rf $TMP/$NAME |
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" |
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if type -p fakeroot ; then |
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echo "$PACKAGING" | fakeroot |
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else |
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su -c "$PACKAGING" |
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fi |
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de348eea9be2d67ec33f9dc6346fd966e4bb538a dsspcmbi.zip |
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|
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|-----handy-ruler------------------------------------------------------| |
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dsspcmbi: dsspcmbi (protein structure prediction program) |
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dsspcmbi: |
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dsspcmbi: DSSP defines secondary structure and solvent exposure of proteins |
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dsspcmbi: from atomic coordinates as given in Protein Data Bank format. |
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dsspcmbi: |
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dsspcmbi: W. Kabsch and C. Sander (1983), BioPolymers 22:2577-2637 |
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dsspcmbi: |
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dsspcmbi: This is the version of the Centre for Molecular and Biomolecular |
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dsspcmbi: Informatics (CMBI) of Netherlands. Restrictions: commercial users |
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dsspcmbi: must apply for a licence; not to be used for classified research. |
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dsspcmbi: |
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Reference in new issue