ap/dsspcmbi: Added.
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#!/bin/bash
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# Build script for Slackware
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# Damien Goutte-Gattat "gouttegd" <damien.goutte-gattat at e.ujf-grenoble.fr>
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#
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# Redistribution and use of this script, with or without modifications, is
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# permitted provided that the following conditions are met:
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#
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# 1. Redistributions of this script must retain the above copyright
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# notice, this list of conditions and the following disclaimer.
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#
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR IMPLIED
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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#
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# Latest dsspcmbi sourcecode is available at:
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# http://swift.cmbi.ru.nl/gv/dssp/
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# Source package infos
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NAMESRC=${NAMESRC:-dsspcmbi}
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VERSION=${VERSION:-20000401}
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ARCHIVE=${ARCHIVE:-$NAMESRC.zip}
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WGET=${WGET:-ftp://ftp.cmbi.ru.nl/pub/molbio/software/$ARCHIVE}
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# Built package infos
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NAMETGZ=${NAMETGZ:-dsspcmbi}
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BUILD=${BUILD:-1GGD}
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ARCH=${ARCH:-i486}
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TARGET=${TARGET:-i486}
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# Directories
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TMP=${TMP:-/tmp}
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OUT=${OUT:-$TMP/build}
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PKG=${PKG:-$OUT/$NAMETGZ}
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CWD=$(pwd)
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set -e # Quit if a command returns non-zero
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# Sanity check
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if [ $UID -eq 0 ]; then
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echo "You should NOT run this script as ROOT!"
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exit 1
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fi
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if [ ! -d $TMP ]; then
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echo "$TMP does not exist or is not a directory!"
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exit 1
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fi
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# Compilation flags
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case "$ARCH" in
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i?86)
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CPUOPT="-O2 -march=$ARCH -mtune=i686"
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;;
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*)
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CPUOPT="-O2"
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;;
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esac
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# Get and verify the source archive
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if [ ! -r $ARCHIVE ]; then
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wget "$WGET"
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fi
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sha1sum -c $ARCHIVE.sha1
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NAME=dssp
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# Compile
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cd $TMP
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echo "Building $ARCHIVE..."
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unzip $CWD/$ARCHIVE
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cd $NAME
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rm dsspcmbi
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gcc -c $CPUOPT -Wall -DGCC \
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AccSurf.c CalcAccSurf.c Contacts.c Date.c DsspCMBI.c Vector.c p2clib.c
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gcc -o dsspcmbi -s *.o -lm
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# Install
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mkdir -p $PKG/usr/bin
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install -m 755 dsspcmbi $PKG/usr/bin
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ln -sv /usr/bin/dsspcmbi $PKG/usr/bin/dssp
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# Install the documentation
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mkdir -p $PKG/usr/doc/$NAMESRC-$VERSION
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install -m 644 \
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COPYRIGHT README.TXT index.html \
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$PKG/usr/doc/$NAMESRC-$VERSION
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# Copy slack-desc file
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install -D -m 755 $CWD/slack-desc $PKG/install/slack-desc
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# Package the tree
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cd $PKG
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mkdir -p $OUT
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PACKAGING="
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chown root:root . -R
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/sbin/makepkg -l y -c n $OUT/$NAMETGZ-$VERSION-$ARCH-$BUILD.tgz
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rm -rf $PKG
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rm -rf $TMP/$NAME
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"
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if type -p fakeroot ; then
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echo "$PACKAGING" | fakeroot
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else
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su -c "$PACKAGING"
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fi
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@ -0,0 +1 @@
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de348eea9be2d67ec33f9dc6346fd966e4bb538a dsspcmbi.zip
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@ -0,0 +1,12 @@
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|-----handy-ruler------------------------------------------------------|
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dsspcmbi: dsspcmbi (protein structure prediction program)
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dsspcmbi:
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dsspcmbi: DSSP defines secondary structure and solvent exposure of proteins
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dsspcmbi: from atomic coordinates as given in Protein Data Bank format.
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dsspcmbi:
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dsspcmbi: W. Kabsch and C. Sander (1983), BioPolymers 22:2577-2637
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dsspcmbi:
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dsspcmbi: This is the version of the Centre for Molecular and Biomolecular
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dsspcmbi: Informatics (CMBI) of Netherlands. Restrictions: commercial users
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dsspcmbi: must apply for a licence; not to be used for classified research.
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dsspcmbi:
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