ap/dsspcmbi: Added.

ap/dsspcmbi/dsspcmbi.SlackBuild

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+#!/bin/bash
+# Build script for Slackware
+# Damien Goutte-Gattat "gouttegd" <damien.goutte-gattat at e.ujf-grenoble.fr>
+#
+# Redistribution and use of this script, with or without modifications, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+#
+# Latest dsspcmbi sourcecode is available at:
+# http://swift.cmbi.ru.nl/gv/dssp/
+
+# Source package infos
+NAMESRC=${NAMESRC:-dsspcmbi}
+VERSION=${VERSION:-20000401}
+ARCHIVE=${ARCHIVE:-$NAMESRC.zip}
+WGET=${WGET:-ftp://ftp.cmbi.ru.nl/pub/molbio/software/$ARCHIVE}
+
+# Built package infos
+NAMETGZ=${NAMETGZ:-dsspcmbi}
+BUILD=${BUILD:-1GGD}
+ARCH=${ARCH:-i486}
+TARGET=${TARGET:-i486}
+
+# Directories
+TMP=${TMP:-/tmp}
+OUT=${OUT:-$TMP/build}
+PKG=${PKG:-$OUT/$NAMETGZ}
+CWD=$(pwd)
+
+set -e  # Quit if a command returns non-zero
+
+# Sanity check
+if [ $UID -eq 0 ]; then
+    echo "You should NOT run this script as ROOT!"
+    exit 1
+fi
+if [ ! -d $TMP ]; then
+    echo "$TMP does not exist or is not a directory!"
+    exit 1
+fi
+
+# Compilation flags
+case "$ARCH" in
+i?86)
+    CPUOPT="-O2 -march=$ARCH -mtune=i686"
+    ;;
+*)
+    CPUOPT="-O2"
+    ;;
+esac
+
+# Get and verify the source archive
+if [ ! -r $ARCHIVE ]; then
+    wget "$WGET"
+fi
+sha1sum -c $ARCHIVE.sha1
+NAME=dssp
+
+# Compile
+cd $TMP
+echo "Building $ARCHIVE..."
+unzip $CWD/$ARCHIVE
+cd $NAME
+rm dsspcmbi
+gcc -c $CPUOPT -Wall -DGCC \
+  AccSurf.c CalcAccSurf.c Contacts.c Date.c DsspCMBI.c Vector.c p2clib.c
+gcc -o dsspcmbi -s *.o -lm
+
+# Install
+mkdir -p $PKG/usr/bin
+install -m 755 dsspcmbi $PKG/usr/bin
+ln -sv /usr/bin/dsspcmbi $PKG/usr/bin/dssp
+
+# Install the documentation
+mkdir -p $PKG/usr/doc/$NAMESRC-$VERSION
+install -m 644 \
+  COPYRIGHT README.TXT index.html \
+  $PKG/usr/doc/$NAMESRC-$VERSION
+
+# Copy slack-desc file
+install -D -m 755 $CWD/slack-desc $PKG/install/slack-desc
+
+# Package the tree
+cd $PKG
+mkdir -p $OUT
+PACKAGING="
+chown root:root . -R
+/sbin/makepkg -l y -c n $OUT/$NAMETGZ-$VERSION-$ARCH-$BUILD.tgz
+rm -rf $PKG
+rm -rf $TMP/$NAME
+"
+if type -p fakeroot ; then
+    echo "$PACKAGING" | fakeroot
+else
+    su -c "$PACKAGING"
+fi

ap/dsspcmbi/dsspcmbi.zip.sha1

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+de348eea9be2d67ec33f9dc6346fd966e4bb538a  dsspcmbi.zip

ap/dsspcmbi/slack-desc

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+        |-----handy-ruler------------------------------------------------------|
+dsspcmbi: dsspcmbi (protein structure prediction program)
+dsspcmbi: 
+dsspcmbi: DSSP defines secondary structure and solvent exposure of proteins
+dsspcmbi: from atomic coordinates as given in Protein Data Bank format.
+dsspcmbi: 
+dsspcmbi: W. Kabsch and C. Sander (1983), BioPolymers 22:2577-2637
+dsspcmbi: 
+dsspcmbi: This is the version of the Centre for Molecular and Biomolecular
+dsspcmbi: Informatics (CMBI) of Netherlands. Restrictions: commercial users
+dsspcmbi: must apply for a licence; not to be used for classified research.
+dsspcmbi: