slackbuilds/n/omero-server/omero-server.SlackBuild

#!/bin/bash
# Build script for Slackware
# Copyright (C) 2009-2020 Damien Goutte-Gattat
#
# Redistribution and use of this script, with or without modifications,
# is permitted provided that the following conditions are met:
#
# 1. Redistributions of this script must retain the above copyright
#    notice, this list of conditions and the following disclaimer.
#
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR AS IS'' AND ANY EXPRESS OR
# IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT,
# INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
# HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
# STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
# IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
#
# Contact: Damien Goutte-Gattat <dgouttegattat@incenp.org>
#
# Latest omero sourcecode is available at: <http://www.openmicroscopy.org/>.
#
# Depends: l/ice-py, l/omero-marshal, l/pytables

# Source package infos
NAMESRC=${NAMESRC:-OMERO.server}
VERSION=${VERSION:-5.6.2}
ARCHIVE=${ARCHIVE:-$NAMESRC-$VERSION-ice36-b226.zip}
WGET=${WGET:-https://downloads.openmicroscopy.org/omero/$VERSION/artifacts/$ARCHIVE}

# Build infos
NAMEPKG=${NAMEPKG:-omero-server}
BUILD=${BUILD:-1GGD}
ARCH=${ARCH:-$(uname -m | sed 's/^i.86$/i486/;s/^arm.*/arm/')}
JOBS=${JOBS:-1}
EXT=${EXT:-txz}

# Directories
TMP=${TMP:-/tmp}
OUT=${OUT:-$TMP/build}
PKG=${PKG:-$OUT/$NAMEPKG}
CWD=$(pwd)

set -e  # Quit if a command returns non-zero

# Sanity checks
if [ $UID -eq 0 ]; then
    echo "You should NOT run this script as ROOT!"
    exit 1
fi
if [ ! -d $TMP ]; then
    echo "$TMP does not exist or is not a directory!"
    exit 1
fi

# Get and verify the source archive
if [ ! -r $ARCHIVE ]; then
    wget -c -O $ARCHIVE.part "$WGET"
    mv $ARCHIVE.part $ARCHIVE
fi
sha256sum -c $ARCHIVE.sha256

# Get and verify OMERO.py
if [ ! -r omero-py-5.7.1.tar.gz ]; then
    pip3 download --no-binary :all: --no-deps omero-py==5.7.1
fi
sha256sum -c omero-py-5.7.1.tar.gz.sha256

# Extract and install
mkdir -p $PKG/opt
cd $PKG/opt
unzip $CWD/$ARCHIVE
mv OMERO.server-$VERSION-ice36-b226 omero
rm omero/etc/env.bat

# Install launch scripts
install -D -m 755 $CWD/omero.sh $PKG/usr/bin/omero
install -D -m 644 $CWD/rc.omero $PKG/etc/rc.d/rc.omero

# Install configuration file
install -D -m 644 $CWD/omero.conf $PKG/etc/omero.conf.new

# Install documentation
mkdir -p $PKG/usr/doc/$NAMEPKG-$VERSION
install -m 644 $CWD/README $PKG/usr/doc/$NAMEPKG-$VERSION
mv omero/LICENSE.txt $PKG/usr/doc/$NAMEPKG-$VERSION
mv omero/history.rst $PKG/usr/doc/$NAMEPKG-$VERSION
mv omero/share/licenses $PKG/usr/doc/$NAMEPKG-$VERSION/licenses

# Install OMERO.py
# This used to be provided along with OMERO.server, but is now
# distributed on PyPI. However given that OMERO.py is necessary
# to even start the server, I don't see the point of packaging
# it separately.
cd $TMP
tar xf $CWD/omero-py-5.7.1.tar.gz
cd omero-py-5.7.1
python3 setup.py build
python3 setup.py install \
  --install-lib=/opt/omero/lib/python \
  --install-scripts=/opt/omero/bin \
  --root=$PKG
rm $PKG/opt/omero/bin/{omero,setpythonpath,winconfig}.bat

# Copy slack-desc and doinst.sh files
mkdir -p $PKG/install
install -m 644 $CWD/slack-desc $PKG/install/slack-desc
install -m 755 $CWD/doinst.sh $PKG/install/doinst.sh

# Add dependency infos
cat <<EOF > $PKG/install/slack-required
ice-py
omero-marshal
pytables
EOF

# Package the tree
cd $PKG
mkdir -p $OUT
PACKAGING="
chown root:root . -R
/sbin/makepkg -l y -c n $OUT/$NAMEPKG-$VERSION-$ARCH-$BUILD.$EXT
rm -rf $PKG
rm -rf $TMP/omero-py-5.7.1
"
if type -p fakeroot ; then
    echo "$PACKAGING" | fakeroot
else
    su -c "$PACKAGING"
fi