|
|
|
@ -76,22 +76,25 @@ has been generated for details. |
|
|
|
% |
|
|
|
% \DoNotIndex{\,} |
|
|
|
% \DoNotIndex{\active} |
|
|
|
% \DoNotIndex{\begingroup} |
|
|
|
% \DoNotIndex{\catcode} |
|
|
|
% \DoNotIndex{\DeclareOption,\def} |
|
|
|
% \DoNotIndex{\else,\empty,\end,\endgroup,\ensuremath} |
|
|
|
% \DoNotIndex{\fi,\frac} |
|
|
|
% \DoNotIndex{\height} |
|
|
|
% \DoNotIndex{\gdef} |
|
|
|
% \DoNotIndex{\height,\hspace} |
|
|
|
% \DoNotIndex{\if,\ifmmode,\ifx,\itshape} |
|
|
|
% \DoNotIndex{\let} |
|
|
|
% \DoNotIndex{\mars,\mathchoice,\mbox,\mercury} |
|
|
|
% \DoNotIndex{\NeedsTeXFormat,\newif,\node,\normalsize} |
|
|
|
% \DoNotIndex{\ProcessOptions,\ProvidesPackage} |
|
|
|
% \DoNotIndex{\RequirePackage,\raisebox,\relax} |
|
|
|
% \DoNotIndex{\text} |
|
|
|
% \DoNotIndex{\text,\textsuperscript} |
|
|
|
% \DoNotIndex{\venus} |
|
|
|
% |
|
|
|
% \changes{0.1}{2013/07/14}{Initial version.} |
|
|
|
% \changes{0.2}{2013/10/09}{Remove limitations.} |
|
|
|
% \changes{0.3}{2014/01/01}{Do not draw Y hook.} |
|
|
|
% \changes{0.3}{2014/01/01}{Do not draw Y hook; add allele macro.} |
|
|
|
% |
|
|
|
% \GetFileInfo{flygenet.dtx} |
|
|
|
% |
|
|
|
@ -116,7 +119,7 @@ has been generated for details. |
|
|
|
% notation, as in the following example: |
|
|
|
% |
|
|
|
% $$ |
|
|
|
% \genotype{C(1)RM,y\ts2/Y; In(2LR)O, Cy cn\ts2 sp\ts2/Sco; ci\ts D/ey\ts D} |
|
|
|
% \genotype{C(1)RM, y^2/Y; In(2LR)O, Cy cn^2 sp^2/Sco; ci^D/ey^D} |
|
|
|
% $$ |
|
|
|
% |
|
|
|
% Consequently, \LaTeX's math mode (and especially displayed math mode, |
|
|
|
@ -132,13 +135,12 @@ has been generated for details. |
|
|
|
% the following code: |
|
|
|
% |
|
|
|
% \begin{verbatim} |
|
|
|
% \let\ts\textsuperscript |
|
|
|
% \genotype{C(1)RM,y\ts2/Y; In(2LR)O,Cy cn\ts2 sp\ts2/Sco; ci\ts D/ey\ts D} |
|
|
|
% \genotype{C(1)RM, y^2/Y; In(2LR)O,Cy cn^2 sp^2/Sco; ci^D/ey^D} |
|
|
|
% \end{verbatim} |
|
|
|
% |
|
|
|
% A complete genotype can thus be written in a very intuitive way, the |
|
|
|
% only \TeX ism being the exponentiation macro, |\ts|, which is defined |
|
|
|
% here as an alias for the |\textsuperscript| macro. |
|
|
|
% only \TeX ism being the exponentiation character (which is redefined, |
|
|
|
% inside the |\genotype| macro, as an alias to the |\allele| macro). |
|
|
|
% |
|
|
|
% |
|
|
|
% \section{User interface} |
|
|
|
@ -160,7 +162,7 @@ has been generated for details. |
|
|
|
% \quad |
|
|
|
% \virgin{cn bw/;TM2/tra} |
|
|
|
% \quad |
|
|
|
% \male{FM7a/Y;In(2LR)O,Cy/+} |
|
|
|
% \male{FM7a/Y;In(2LR)O, Cy/+} |
|
|
|
% $$ |
|
|
|
% |
|
|
|
% The plural forms of these macros (|\females|, |\males|, and |
|
|
|
@ -259,9 +261,26 @@ has been generated for details. |
|
|
|
% \end{macro} |
|
|
|
% |
|
|
|
% \begin{macro}{\genotype} |
|
|
|
% This macro is the main user interface to typeset a genotype. |
|
|
|
% This macro is the main user interface to typeset a genotype. Its |
|
|
|
% definition is a bit tricky because we redefine the \textasciicircum\ character as |
|
|
|
% an alias to the |\allele| macro. |
|
|
|
% \begin{macrocode} |
|
|
|
\begingroup |
|
|
|
\catcode`\^=\active |
|
|
|
\gdef\genotype{% |
|
|
|
\catcode`\^=\active% |
|
|
|
\let^\allele% |
|
|
|
\end@genotype} |
|
|
|
\gdef\end@genotype#1{\FG@parsechromosome#1;\end} |
|
|
|
\endgroup |
|
|
|
% \end{macrocode} |
|
|
|
% \end{macro} |
|
|
|
% |
|
|
|
% \begin{macro}{\allele} |
|
|
|
% This macro typesets its argument as a superscript. It is intended to |
|
|
|
% represent alleles of a gene. |
|
|
|
% \begin{macrocode} |
|
|
|
\def\genotype#1{\FG@parsechromosome#1;\end} |
|
|
|
\def\allele#1{\hspace{.1em}\textsuperscript{#1}} |
|
|
|
% \end{macrocode} |
|
|
|
% \end{macro} |
|
|
|
% |
|
|
|
|
