 Damien Goutte-Gattat
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671486d80c
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Add more documentation.
Start properly documenting the project in a Sphinx-based manual.
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2 years ago |
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Damien Goutte-Gattat
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f4656c4a56
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Typo fix.
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2 years ago |
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Damien Goutte-Gattat
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a87abf8e62
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Add dependencies in setup.py.
Add Biopython as a required dependency, and reportlab as an optional
dependency. Do not require reportlab to launch the seqtool program.
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2 years ago |
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Damien Goutte-Gattat
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ab6e617215
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Rework the seqvault command.
Move the seqvault command to a separate Click-based module.
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2 years ago |
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Damien Goutte-Gattat
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1b4084fd91
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Reorganize the seq utilities.
Regroup all command-line tools into a single Click-based master tool.
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2 years ago |
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Damien Goutte-Gattat
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c67bc2fc81
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Add the plasmidmap module.
Add a module to draw plasmid maps from annotated plasmid records.
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2 years ago |
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Damien Goutte-Gattat
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c13cf25fd7
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Add the gateway module and script.
Add a module to perform in-silico Gateway reactions.
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2 years ago |
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Damien Goutte-Gattat
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c969bcfe3e
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Add a BLAST wrapper.
Add a wrapper for the various BLAST commands.
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2 years ago |
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Damien Goutte-Gattat
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b01408769d
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Add the idotter wrapper script.
Add a script to wrap the dotter program, allowing to use it with
sequence files in any format supported by Biopython instead of only
FASTA files.
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2 years ago |
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Damien Goutte-Gattat
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c27d86d994
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Add the cc3d-runner script.
Add a wrapper script around CC3D’s own script runner to allow
parameterized simulation runs.
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2 years ago |
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Damien Goutte-Gattat
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c7f393b622
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Add the silencing module.
Add a module for functions intended to help manipulating or
designing siRNA and similar objects.
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2 years ago |
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Damien Goutte-Gattat
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9ff12f00d4
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Initial commit.
This is incenp.bioutils, a package of command line utilities and
helper Python modules for computational biology, mostly built on
top of Biopython.
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2 years ago |
