Support for some binary sequence formats for BioPython.
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Damien Goutte-Gattat 17265f4884 Apply changes from the Biopython pull request. 1 week ago
incenp Apply changes from the Biopython pull request. 1 week ago
.gitignore Prepare first release. 7 months ago
AUTHORS Prepare first release. 7 months ago
LICENSE.txt Improve packaging. 1 year ago
MANIFEST.in Prepare next release. 2 weeks ago
NEWS Prepare next release. 2 weeks ago
README.md Add support for the Gene Construction Kit format. 2 weeks ago
setup.py Prepare next release. 2 weeks ago

README.md

BinSeqs - Support for binary sequence formats in Bioython

BinSeqs is a Python package intended to enrich the SeqIO framework from Biopython by adding support for some binary sequence formats.

Formats supported

Usage

The BinSeqs parsers and writers are not designed to be used independently and should instead be used through the Biopython’s SeqIO module.

Simply import the incenp.bio.seqio module to make the parsers and writers available to Biopython’s SeqIO:

from Bio import SeqIO
import incenp.bio.seqio

records = list(SeqIO.parse('snapgene_file.dna', 'snapgene'))
SeqIO.write(records, 'serialcloner_file.xdna', 'xdna')

Copying

BinSeqs is free software and distributed under the terms of a BSD-like license. The full license is included in the LICENSE.txt file of the source distribution.

Homepage

The project is located at https://incenp.org/dvlpt/binseqs.html (homepage) and https://git.incenp.org/damien/binseqs (repository and bug tracker).