Apply changes from the Biopython pull request.
I am about to abandon this project as soon as the parsers will have been merged in Biopython itself. But until that happens, I will make sure to duplicate here any changes I do on the Biopython version so that the parsers always behave identically no matter which project they are from.
|1 week ago|
|incenp||1 week ago|
|.gitignore||7 months ago|
|AUTHORS||7 months ago|
|LICENSE.txt||1 year ago|
|MANIFEST.in||2 weeks ago|
|NEWS||2 weeks ago|
|README.md||2 weeks ago|
|setup.py||2 weeks ago|
BinSeqs is a Python package intended to enrich the SeqIO framework from Biopython by adding support for some binary sequence formats.
xdnaformat, used by DNA Strider and Serial Cloner: reading and writing supported
snapgeneformat, used by SnapGene: reading support only
gckformat, used by Gene Construction Kit: reading support only
The BinSeqs parsers and writers are not designed to be used independently and should instead be used through the Biopython’s SeqIO module.
Simply import the
incenp.bio.seqio module to make the parsers
and writers available to Biopython’s SeqIO:
from Bio import SeqIO import incenp.bio.seqio records = list(SeqIO.parse('snapgene_file.dna', 'snapgene')) SeqIO.write(records, 'serialcloner_file.xdna', 'xdna')
BinSeqs is free software and distributed under the terms of a BSD-like license. The full license is included in the LICENSE.txt file of the source distribution.